JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLCN_chr17_17207212_17242168	0/0	c0003	1740	9	7	1	0	0	1	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	c0004	1740	2	0	0	0	0	2	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	c0005	1740	1	0	1	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	c0006	1740	1	0	0	1	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLG2_chr1_152343735_152365006	1/1	c0001	7176	117	17	19	55	7	17	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0002	6945	67	0	11	47	0	9	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0003	7176	43	0	0	43	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0004	6945	36	3	11	18	1	3	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0005	7176	20	0	9	5	2	4	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0006	7176	18	18	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0007	7176	18	17	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0008	6945	17	0	10	7	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0009	7176	7	0	0	7	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0010	7176	6	6	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0011	7176	5	0	0	5	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0012	7176	5	0	0	5	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0013	7176	4	0	1	1	0	2	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0014	7176	4	4	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0015	7176	3	3	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0016	7176	3	3	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0017	7176	3	3	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0018	7176	2	0	0	0	0	2	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0019	7176	2	0	2	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0020	7176	2	0	0	2	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0021	6951	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0022	7176	2	0	0	2	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0023	7176	2	0	0	0	0	2	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0024	7176	2	0	2	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0025	9207	2	0	0	2	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0026	7176	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0027	7176	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0028	7176	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0029	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0030	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0031	6945	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0032	7176	1	0	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0033	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0034	7176	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0035	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0036	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0037	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0038	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0039	6951	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0040	7176	1	0	0	0	0	1	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0041	7176	1	0	0	0	0	1	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0042	7176	1	0	0	0	0	1	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0043	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0044	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0045	6945	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0046	6945	1	0	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006