JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLG2_chr1_152343735_152365006	0/0	c0047	6720	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0048	6945	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0049	6945	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0050	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0051	7176	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	c0052	6945	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG_chr1_152297165_152330239	0/0	c0001	14133	42	0	13	25	1	3	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/1	c0002	13158	20	3	10	4	2	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0003	12186	19	2	2	5	3	7	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0004	14133	16	0	7	9	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0005	12186	13	0	0	13	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0006	13158	13	0	0	13	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0007	13158	11	0	4	3	0	4	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0008	13158	11	0	0	11	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0009	12186	8	0	0	8	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0010	12189	6	6	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0011	14133	5	0	0	5	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0012	12189	4	4	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0013	14133	4	0	0	4	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0014	12186	4	0	4	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0015	13158	4	4	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0016	14133	4	0	0	3	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0017	14133	4	0	0	4	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0018	14133	4	0	0	4	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0019	14133	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0020	13158	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0021	9267	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0022	13158	3	0	2	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0023	12186	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0024	12186	3	0	3	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0025	12189	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0026	12189	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0027	12189	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0028	14133	3	0	0	0	0	3	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0029	14133	3	0	0	2	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0030	14133	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0031	14133	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0032	13158	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0033	13161	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0034	12186	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0035	12186	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0036	13158	2	0	0	2	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0037	13158	2	0	1	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0038	12186	2	0	0	2	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0039	12186	2	0	0	2	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0040	13158	2	2	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0041	13158	2	1	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0042	13158	2	2	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0043	13158	2	0	1	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0044	13158	2	0	2	0	0	0	copy fasta	FLG	chr1	152297165	152330239