Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGAP5_chr10_73669295_73703109	0/0	c0015	2061	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0016	2061	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0017	2061	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0018	2061	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0019	2061	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0020	2061	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0021	2061	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0022	2061	1	0	1	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP6_chr10_49983406_50015499	1/0	c0001	2061	186	36	30	96	5	18	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0002	2061	110	20	22	59	4	5	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0003	2060	36	5	9	14	2	6	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0004	2060	18	7	2	7	1	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0005	2061	6	1	5	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/1	c0006	2061	6	5	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0007	2061	6	6	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0008	2061	4	3	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0009	2047	3	0	0	3	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0010	2061	3	3	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0011	2061	2	0	0	2	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0012	2061	2	2	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0013	2061	2	2	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0014	2060	2	0	2	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0015	2061	1	0	0	0	0	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0016	2061	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0017	2061	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0018	2061	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0019	2061	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0020	2061	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0021	2061	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0022	2061	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0023	2061	1	0	0	0	0	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0024	2061	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0025	2061	1	0	0	0	0	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0026	2060	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0027	2060	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0028	2061	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0029	2061	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0030	2061	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0031	2060	1	0	0	0	0	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0032	2061	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0033	2061	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	c0034	2061	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP9_chr10_47496854_47528638	1/1	c0001	1977	152	28	34	54	13	21	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0002	1984	10	5	2	0	0	3	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0003	1977	8	7	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0004	1977	4	3	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0005	1977	4	4	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0006	1581	3	2	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0007	1977	2	0	0	0	1	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0008	1977	2	1	0	1	0	0	copy fasta	AGAP9	chr10	47496854	47528638