JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLG_chr1_152297165_152330239	0/0	c0095	13158	1	0	0	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0096	12186	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0097	12186	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0098	13158	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0099	13158	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0100	13158	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0101	13158	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0102	13158	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	1/0	c0103	12186	1	0	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0104	13158	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0105	13158	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0106	13158	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0107	13158	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0108	14135	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0109	12186	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0110	12186	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0111	13158	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0112	12186	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0113	12186	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0114	12186	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0115	12186	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0116	13158	1	0	0	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0117	13158	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0118	11214	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0119	11214	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0120	11214	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0121	11214	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0122	12189	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0123	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0124	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0125	13158	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0126	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0127	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0128	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0129	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0130	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0131	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0132	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0133	12189	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0134	13161	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0135	13161	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0136	13158	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0137	15105	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0138	14133	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0139	14133	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0140	14133	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0141	13158	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0142	14133	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0143	14133	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	c0144	14133	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239