JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLI1_chr11_128689072_128818267	0/0	c0004	1359	19	13	2	2	0	2	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0005	1359	5	0	1	4	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0006	1359	2	0	0	2	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0007	1359	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0008	1359	1	0	1	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0009	1359	1	0	0	1	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0010	1359	1	0	0	1	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0011	1359	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0012	1359	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	c0013	1359	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLII_chr17_18239815_18263738	1/1	c0001	3810	271	57	54	123	5	30	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0002	3810	84	19	14	42	2	7	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0003	3810	12	10	2	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0004	3810	6	0	0	6	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0005	3810	5	2	1	2	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0006	3810	3	0	1	0	2	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0007	3810	2	0	1	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0008	3810	2	2	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0009	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0010	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0011	3810	1	0	0	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0012	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0013	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0014	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0015	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0016	3810	1	0	0	0	1	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0017	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0018	3810	1	0	0	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0019	3810	1	0	0	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0020	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0021	3771	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0022	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0023	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0024	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0025	3810	1	0	1	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0026	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0027	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0028	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0029	3810	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0030	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0031	3810	1	0	0	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0032	3810	1	0	1	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0033	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0034	3810	1	0	1	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	c0035	3810	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLNA_chrX_154343531_154379634	1/1	c0001	7944	145	10	30	79	3	21	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0002	7944	43	11	18	10	1	3	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0003	7944	18	17	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0004	7944	12	12	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0005	7944	8	8	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634