JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLNA_chrX_154343531_154379634	0/0	c0006	7944	6	4	2	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0007	7944	2	0	0	0	2	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0008	7944	2	0	0	2	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0009	7944	2	0	0	0	2	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0010	7944	2	2	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0011	7944	2	2	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0012	7944	2	0	0	2	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0013	7944	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0014	7944	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0015	7947	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0016	7945	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0017	7944	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0018	7944	1	0	0	0	1	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0019	7945	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0020	7944	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0021	7944	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0022	7944	1	0	0	0	1	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0023	7944	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0024	7943	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0025	7944	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0026	7943	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0027	7940	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0028	7944	1	0	0	0	0	1	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0029	7944	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0030	7943	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0031	7944	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0032	7943	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0033	7945	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0034	7943	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0035	7944	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0036	7944	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0037	7944	1	0	0	0	0	1	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0038	7944	1	0	0	0	1	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0039	7944	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0040	7944	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0041	7944	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0042	7936	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0043	7944	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0044	7944	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0045	7944	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0046	7944	1	0	0	0	0	1	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	c0047	7940	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNB_chr3_58003422_58177251	0/0	c0001	7809	62	20	15	16	2	9	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	1/0	c0002	7809	22	5	7	0	4	5	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	c0003	7809	8	0	4	0	2	2	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/1	c0004	7809	7	1	3	0	0	2	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	c0005	7809	7	0	0	6	0	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	c0006	7809	5	3	2	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	c0007	7809	4	0	2	0	1	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	c0008	7809	3	3	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251