JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLNC_chr7_128825406_128864272	0/0	c0002	8178	48	9	7	29	0	3	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0003	8178	25	2	4	10	2	7	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0004	8178	23	22	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0005	8178	19	1	4	14	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0006	8178	9	0	0	7	0	2	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0007	8178	8	0	0	8	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0008	8178	8	0	3	5	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0009	8178	6	0	1	5	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0010	8178	6	6	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0011	8178	5	5	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0012	8178	4	0	2	0	2	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0013	8178	4	0	0	4	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0014	8178	3	0	0	2	1	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0015	8178	3	0	0	3	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0016	8178	3	0	0	3	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0017	8178	3	3	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0018	8178	3	2	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0019	8178	3	3	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0020	8178	3	1	1	0	1	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0021	8178	3	0	0	3	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0022	8178	3	0	0	3	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0023	8178	3	3	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0024	8178	3	0	0	3	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0025	8178	2	2	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0026	8178	2	0	1	0	1	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0027	8178	2	0	0	0	0	2	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0028	8178	2	2	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0029	8178	2	0	2	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	1/0	c0030	8178	2	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0031	8178	2	2	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0032	8178	2	0	0	0	1	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0033	8178	2	0	0	2	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0034	8178	2	1	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0035	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0036	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0037	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0038	8178	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0039	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0040	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0041	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0042	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0043	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0044	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0045	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0046	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0047	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0048	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0049	8178	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0050	8178	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0051	8178	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272