JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLNC_chr7_128825406_128864272	0/0	c0052	8178	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0053	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0054	8178	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0055	8178	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0056	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0057	8178	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0058	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0059	8178	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0060	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0061	8178	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0062	8178	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0063	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0064	8178	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0065	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0066	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0067	8178	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0068	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0069	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0070	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0071	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0072	8178	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	c0073	8178	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLOT1_chr6_30722709_30747687	0/1	c0001	1284	348	64	82	144	18	39	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	c0002	1284	49	5	1	42	0	1	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	c0003	1284	39	22	3	8	0	6	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	c0004	1284	3	3	0	0	0	0	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	c0005	1284	1	0	0	1	0	0	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	c0006	1284	1	0	0	1	0	0	copy fasta	FLOT1	chr6	30722709	30747687
FLOT2_chr17_28874339_28902733	1/1	c0001	1287	410	85	80	186	16	41	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0002	1287	2	2	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0003	1287	2	2	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0004	1287	2	2	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0005	1287	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0006	1287	1	1	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0007	1287	1	0	0	0	0	1	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0008	1287	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0009	1287	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	c0010	1287	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLRT1_chr11_64030931_64124171	0/0	c0001	2025	66	45	4	8	1	8	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0002	2025	54	0	7	47	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0003	2025	51	4	11	20	3	13	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/1	c0004	2025	41	4	17	18	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0005	2025	16	7	0	4	1	4	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0006	2025	15	3	2	9	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0007	2025	15	1	6	6	0	2	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	1/0	c0008	2025	11	10	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0009	2025	7	0	5	0	0	2	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0010	2025	6	5	1	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0011	2025	4	4	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0012	2025	3	1	1	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171