JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLRT1_chr11_64030931_64124171	0/0	c0013	2025	2	0	2	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0014	2025	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0015	2025	1	0	0	0	1	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0016	2025	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0017	2025	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0018	2025	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0019	2025	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0020	2025	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0021	2025	1	0	0	1	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	c0022	2025	1	0	0	1	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT2_chr14_85525144_85659428	0/1	c0001	1983	262	70	42	116	7	26	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0002	1983	42	3	16	15	2	6	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0003	1983	15	0	0	12	0	3	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0004	1983	5	5	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	1/0	c0005	1983	4	0	0	3	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0006	1983	3	0	2	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0007	1983	2	0	0	2	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0008	1983	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0009	1983	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0010	1983	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0011	1983	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	c0012	1983	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT3_chr20_14317985_14342612	1/0	c0001	1950	182	31	21	103	10	16	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0002	1950	114	25	18	61	2	8	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/1	c0003	1950	94	13	31	30	5	14	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0004	1950	20	10	2	5	1	2	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0005	1950	8	3	0	2	0	3	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0006	1950	5	5	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0007	1950	2	0	0	2	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0008	1950	1	0	0	0	0	1	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0009	1950	1	0	1	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0010	1950	1	0	1	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0011	1950	1	1	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	c0012	1950	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLT1_chr13_28295346_28500128	0/1	c0001	4017	89	13	12	42	7	14	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	1/0	c0002	4017	51	39	8	0	2	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0003	4017	27	8	2	7	1	9	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0004	4017	16	14	1	0	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0005	4017	10	0	7	0	0	3	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0006	4017	5	0	3	1	1	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0007	4017	3	2	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0008	4017	3	3	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0009	4017	2	0	0	0	0	2	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0010	4017	2	0	2	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0011	4017	2	2	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0012	4017	2	0	0	2	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0013	4017	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0014	4017	1	0	0	0	1	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0015	4017	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0016	4017	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128