JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLT1_chr13_28295346_28500128	0/0	c0017	4017	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0018	4017	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0019	4017	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0020	4017	1	0	0	0	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0021	4017	1	0	0	0	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0022	4017	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0023	4017	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0024	4017	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0025	4017	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0026	4017	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0027	4017	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	c0028	4017	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT3LG_chr19_49469215_49491231	1/0	c0001	708	248	43	59	97	9	39	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/1	c0002	708	71	41	10	14	2	3	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	c0003	708	9	7	2	0	0	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	c0004	708	1	0	0	1	0	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	c0005	708	1	0	0	0	1	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	c0006	708	1	0	1	0	0	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	c0007	708	1	1	0	0	0	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3_chr13_27998274_28105576	0/1	c0001	2982	67	2	20	27	6	11	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0002	2982	59	9	16	14	7	13	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0003	2982	31	18	2	6	3	2	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0004	2982	24	5	1	12	0	6	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0005	2982	24	2	1	19	0	2	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0006	2982	9	2	3	3	0	1	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0007	2982	7	4	3	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0008	2982	6	0	0	6	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0009	2982	6	6	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0010	2982	4	0	0	4	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	1/0	c0011	2982	3	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0012	2982	3	1	2	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0013	2982	3	2	1	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0014	2982	2	0	2	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0015	2982	2	0	1	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0016	2982	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0017	2982	2	0	2	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0018	2982	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0019	2982	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0020	2982	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0021	2982	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0022	2982	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0023	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0024	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0025	2982	1	0	0	0	0	1	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0026	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0027	2982	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0028	2982	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0029	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0030	2982	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0031	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576