Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGAP9_chr10_47496854_47528638	0/0	c0009	1977	2	0	2	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0010	1977	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0011	1977	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0012	1977	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0013	1984	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0014	1984	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0015	1977	1	0	0	1	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0016	1977	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0017	1977	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0018	1977	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0019	1977	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0020	1977	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0021	1977	1	0	0	1	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0022	1977	1	0	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0023	1977	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0024	1977	1	0	0	1	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0025	1977	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0026	1984	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0027	1984	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	c0028	1978	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGA_chr4_177425774_177447437	0/1	c0001	1041	404	65	72	204	16	46	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	1/0	c0002	1041	25	22	2	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	c0003	1041	4	4	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	c0004	1041	3	0	3	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	c0005	1041	2	1	1	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	c0008	1041	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	c0009	1041	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGBL1_chr15_86074871_86921156	0/0	c0001	3366	14	11	2	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0002	3366	11	6	1	2	1	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0003	3366	10	1	5	2	0	2	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0004	3366	6	0	2	1	1	2	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0005	3366	6	4	1	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0006	3366	5	0	1	1	0	3	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0007	3366	5	4	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0008	3366	4	0	0	3	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0009	3366	4	4	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0010	3366	3	3	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0011	3366	3	2	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0012	3366	3	0	0	3	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0013	3366	2	0	0	2	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0014	3366	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0015	3366	2	1	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0016	3366	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0017	3366	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0018	3366	2	0	0	0	0	2	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0019	3366	2	0	0	1	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0020	3366	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0021	3366	2	0	1	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156