JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLT3_chr13_27998274_28105576	0/0	c0032	2982	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0033	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0034	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0035	2982	1	0	1	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0036	2982	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0037	2982	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0038	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0039	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0040	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0041	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0042	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0043	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0044	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0045	2982	1	0	1	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0046	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0047	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0048	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0049	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	c0050	2982	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT4_chr5_180596506_180654600	0/0	c0001	4092	155	33	36	66	4	16	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0002	4092	67	4	18	30	4	11	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0003	4092	51	26	1	17	2	5	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0004	4092	17	1	1	13	2	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0005	4092	9	1	7	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0006	4092	6	0	4	2	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0007	4092	6	0	4	0	1	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0008	4092	5	0	0	5	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0009	4092	5	0	2	3	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0010	4092	4	2	1	0	1	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0011	4092	4	0	0	1	0	3	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0012	4092	3	3	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0013	4092	3	0	0	3	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0014	4092	3	2	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0015	4092	3	3	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0016	4092	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0017	4092	2	0	0	0	2	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0018	4092	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0019	4092	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0020	4092	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0021	4092	2	0	0	0	1	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0022	4092	2	0	0	2	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0023	4092	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0024	4092	2	0	2	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0025	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0026	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0027	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0028	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0029	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0030	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0031	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600