JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLT4_chr5_180596506_180654600	0/0	c0032	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0033	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0034	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0035	4092	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0036	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0037	4092	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0038	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0039	4092	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0040	4092	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0041	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0042	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0043	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0044	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0045	4092	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0046	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0047	4092	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0048	4092	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0049	4092	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0050	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0051	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0052	4092	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	c0053	4092	1	0	0	0	1	0	copy fasta	FLT4	chr5	180596506	180654600
FLVCR1_chr1_212853275_212904363	1/1	c0001	1668	194	58	37	70	9	18	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	c0002	1668	125	9	14	76	8	18	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	c0003	1668	36	15	2	19	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	c0004	1668	8	3	2	2	1	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	c0005	1668	3	0	3	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	c0006	1668	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	c0007	1668	1	0	0	1	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR2_chr14_75573620_75653167	0/0	c0001	1581	175	56	29	65	6	19	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	1/1	c0002	1581	98	3	24	52	4	13	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0003	1581	51	17	10	15	5	4	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0004	1581	3	3	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0005	1581	3	3	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0006	1581	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0007	1581	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0008	1581	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0009	1563	1	0	1	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0010	1581	1	0	0	0	1	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	c0011	1581	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLYWCH1_chr16_2906931_2956208	1/0	c0001	2151	206	31	42	94	13	25	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0002	2151	90	15	15	52	0	8	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/1	c0003	2151	28	5	9	9	3	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0004	2151	14	14	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0005	2151	7	0	6	0	1	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0006	2151	7	0	0	7	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0007	2151	4	4	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0008	2151	3	3	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0009	2151	3	0	0	3	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0010	2151	2	0	1	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208