JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FLYWCH1_chr16_2906931_2956208	0/0	c0011	2151	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0012	2151	2	1	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0013	2151	2	0	0	0	0	2	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0014	2151	2	0	1	0	1	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0015	2151	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0016	2151	2	0	0	2	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0017	2151	2	0	0	0	0	2	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0018	2151	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0019	2151	2	0	2	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0020	2151	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0021	2151	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0022	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0023	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0024	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0025	2151	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0026	2151	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0027	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0028	2151	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0029	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0030	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0031	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0032	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0033	2151	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0034	2151	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0035	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0036	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0037	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0038	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0039	2151	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0040	2151	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0041	2151	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0042	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0043	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0044	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0045	2151	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0046	2151	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0047	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0048	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0049	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0050	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	c0051	2151	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH2_chr16_2878215_2904365	1/1	c0001	423	378	76	78	166	18	38	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	c0002	423	8	8	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	c0003	423	2	2	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	c0004	423	2	2	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FMC1_chr7_139336337_139351328	1/1	c0001	342	239	11	55	132	9	30	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	c0002	342	172	85	21	47	7	12	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	c0003	342	1	0	0	1	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMN1_chr15_32760544_33199714	0/0	c0001	4260	19	0	1	18	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	1/0	c0002	4260	15	9	1	2	0	2	copy fasta	FMN1	chr15	32760544	33199714