JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMN1_chr15_32760544_33199714	0/0	c0003	4260	7	5	2	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0004	4260	7	0	1	5	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0005	4260	6	3	1	0	2	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0006	4260	6	3	0	1	1	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0007	4260	6	1	1	3	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0008	4260	4	1	0	0	3	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0009	4260	4	4	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0010	4260	4	0	2	2	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0011	4260	4	0	1	2	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0012	4260	3	0	1	0	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0013	4260	3	1	1	0	1	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0014	4260	3	3	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0015	4260	3	0	0	1	1	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0016	4260	3	0	1	2	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0017	4260	3	2	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0018	4260	3	0	1	0	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0019	4260	3	2	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0020	4260	2	1	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0021	4260	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0022	4260	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0023	4260	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0024	4257	2	0	1	0	1	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/1	c0025	4260	2	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0026	4260	2	0	1	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0027	4260	2	1	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0028	4260	2	0	1	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0029	4260	2	0	0	2	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0030	4260	2	0	0	2	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0031	4260	2	0	0	0	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0032	4260	2	0	2	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0033	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0034	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0035	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0036	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0037	4260	1	0	0	0	1	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0038	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0039	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0040	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0041	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0042	4257	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0043	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0044	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0045	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0046	4260	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0047	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0048	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0049	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0050	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0051	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0052	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714