JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMN1_chr15_32760544_33199714	0/0	c0053	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0054	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0055	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0056	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0057	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0058	4260	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0059	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0060	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0061	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0062	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0063	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0064	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0065	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0066	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0067	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0068	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0069	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0070	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0071	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0072	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0073	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0074	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0075	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0076	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0077	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0078	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0079	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0080	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0081	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0082	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0083	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0084	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0085	4260	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0086	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0087	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0088	4260	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0089	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0090	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0091	4260	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0092	4260	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0093	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0094	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0095	4260	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	c0096	4260	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN2_chr1_240086883_240480187	0/0	c0001	5298	6	1	3	0	0	2	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0002	5169	4	0	2	1	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0003	5268	3	1	1	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0004	5136	3	0	1	1	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0005	5235	3	0	1	0	2	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0006	5265	3	1	0	2	0	0	copy fasta	FMN2	chr1	240086883	240480187