JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMN2_chr1_240086883_240480187	0/0	c0007	5166	3	0	1	1	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0008	5166	3	0	3	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0009	5298	3	3	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0010	5166	3	3	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0011	5241	2	2	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0012	5169	2	0	0	2	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0013	5169	2	0	0	2	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0014	5169	2	0	0	2	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0015	5166	2	0	0	0	2	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0016	5166	2	0	1	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0017	5298	2	0	0	1	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0018	5166	2	0	0	2	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0019	5238	2	2	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0020	5265	2	2	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0021	5166	2	0	2	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0022	5295	2	2	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0023	5298	2	2	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0024	5199	2	2	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0025	5169	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0026	5170	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0027	5241	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0028	5076	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0029	5301	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0030	5136	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0031	5334	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0032	5268	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0033	5268	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0034	5400	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0035	5169	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0036	5169	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0037	5169	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0038	5169	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	1/0	c0039	5169	1	0	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0040	5302	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0041	4839	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0042	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0043	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0044	5301	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0045	5301	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0046	5202	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0047	5202	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0048	5268	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0049	5334	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0050	5268	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0051	5169	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0052	5136	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0053	5169	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0054	5169	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0055	5238	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0056	5199	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187