JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMN2_chr1_240086883_240480187	0/0	c0057	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0058	5400	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0059	5301	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0060	5424	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/1	c0061	5133	1	0	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0062	5134	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0063	5133	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0064	5133	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0065	5266	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0066	5365	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0067	5265	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0068	5133	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0069	5166	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0070	5133	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0071	5166	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0072	5298	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0073	5265	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0074	5034	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0075	5295	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0076	5298	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0077	5298	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0078	5298	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0079	5167	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0080	5134	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0081	5265	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0082	5100	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0083	5166	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0084	5166	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0085	5166	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0086	5166	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0087	5133	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0088	5100	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0089	5298	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0090	5331	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0091	5167	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0092	5167	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0093	5167	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0094	5265	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0095	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0096	5166	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0097	5199	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0098	5166	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0099	5166	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0100	5166	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0101	5166	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0102	5199	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0103	5199	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0104	5133	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0105	5364	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0106	5299	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187