JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMN2_chr1_240086883_240480187	0/0	c0107	5296	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0108	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0109	5265	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0110	5238	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0111	5199	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0112	5299	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0113	5167	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0114	5265	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0115	5067	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0116	5166	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0117	5166	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0118	5133	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0119	5133	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0120	5100	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0121	5166	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0122	5364	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0123	5100	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0124	5562	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0125	5265	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0126	5397	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0127	5166	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0128	5298	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0129	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0130	5199	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0131	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0132	5298	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0133	5299	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0134	5200	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0135	5199	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	c0136	5199	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMNL1_chr17_45216885_45252318	0/0	c0001	3303	106	14	25	59	4	4	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0002	3303	94	14	23	33	5	19	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/1	c0003	3300	85	33	16	30	2	3	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0004	3303	38	2	6	21	1	8	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0005	3306	12	7	2	0	2	1	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0006	3297	7	0	0	7	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0007	3300	7	7	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0008	3300	4	0	0	4	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0009	3303	3	0	0	3	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0010	3294	3	0	0	3	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0011	3303	3	3	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0012	3300	2	0	2	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0013	3300	2	2	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0014	3303	2	0	0	0	0	2	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0015	3300	2	2	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0016	3300	2	2	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0017	3303	1	0	0	0	0	1	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0018	3303	1	0	0	1	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0019	3303	1	0	0	1	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0020	3303	1	0	1	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318