JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMNL1_chr17_45216885_45252318	0/0	c0021	3300	1	0	0	1	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0022	3294	1	0	1	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0023	3300	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	1/0	c0024	3303	1	0	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0025	3300	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0026	3300	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0027	3303	1	0	0	1	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	c0028	3303	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL2_chr2_152330174_152654826	0/0	c0001	3282	50	3	15	21	3	8	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0002	3283	28	5	11	7	0	5	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0003	3282	17	10	3	1	0	3	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0004	3283	15	7	4	3	0	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/1	c0005	3282	15	7	1	4	0	2	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0006	3282	8	3	2	0	2	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0007	3283	7	3	2	0	0	2	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0008	3283	4	4	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0009	3283	4	1	2	0	0	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0010	3282	3	0	1	0	1	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0011	3282	3	3	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0012	3283	3	2	0	0	0	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0013	3282	3	3	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0014	3282	2	2	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0015	3279	2	1	0	0	1	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0016	3283	2	0	2	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0017	3282	2	1	0	0	0	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0018	3282	2	2	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0019	3283	2	2	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0020	3282	2	2	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0021	3283	2	2	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0022	3283	2	0	1	0	0	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0023	3283	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0024	3279	1	0	0	1	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0025	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0026	3283	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0027	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0028	3282	1	0	1	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0029	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0030	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0031	3283	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0032	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0033	3283	1	0	0	0	0	1	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0034	3282	1	0	0	0	1	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0035	3283	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0036	3283	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0037	3282	1	0	0	1	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0038	3282	1	0	1	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0039	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	1/0	c0040	3279	1	0	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0041	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0042	3282	1	0	1	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826