JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMNL2_chr2_152330174_152654826	0/0	c0043	3282	1	0	1	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	c0044	3282	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL3_chr12_49631499_49712405	1/1	c0001	3084	134	64	20	30	6	12	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	c0002	3084	9	9	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	c0003	3084	2	2	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	c0004	3084	2	2	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	c0005	3084	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	c0006	3084	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	c0007	3084	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMO1_chr1_171243494_171290961	1/1	c0001	1599	203	23	42	108	5	23	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0002	1599	74	45	7	6	1	15	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0003	1599	20	18	0	2	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0004	1599	3	3	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0005	1599	3	3	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0006	1599	2	2	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0007	1599	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0008	1599	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0009	1599	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0010	1532	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0011	1599	1	0	1	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0012	1599	1	1	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	c0013	1599	1	1	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO2_chr1_171180300_171217686	0/1	c0001	1608	105	12	15	61	5	11	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0002	1609	72	4	10	44	2	12	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0003	1608	46	1	7	25	1	12	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0004	1608	36	17	7	7	2	3	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0005	1608	28	0	6	22	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0006	1610	24	18	3	1	2	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0007	1608	10	10	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0008	1608	8	4	3	0	1	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0009	1609	8	8	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0010	1608	4	4	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0011	1608	4	4	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0012	1608	3	3	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0013	1608	3	0	2	0	1	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0014	1608	3	3	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0015	1608	3	0	3	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0016	1608	3	0	0	3	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0017	1608	2	2	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	1/0	c0018	1608	1	0	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0019	1609	1	0	0	1	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0020	1608	1	0	0	1	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	c0021	1608	1	0	0	1	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO3_chr1_171085905_171122819	1/1	c0001	1599	129	16	30	68	4	9	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0002	1599	65	2	16	38	0	9	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0003	1599	55	18	13	8	5	11	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0004	1599	48	3	9	31	0	5	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0005	1599	42	3	6	28	4	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0006	1599	21	20	1	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0007	1599	9	9	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819