Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGBL1_chr15_86074871_86921156	0/0	c0022	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0023	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0024	3366	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0025	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0026	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0027	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0028	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0029	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0030	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0031	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0032	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0033	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0034	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0035	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0036	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0037	3366	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0038	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0039	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0040	3366	1	0	0	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0041	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0042	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0043	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0044	3366	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0045	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0046	3366	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0047	3366	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0048	3366	1	0	0	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0049	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0050	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0051	3366	1	0	0	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0052	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0053	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0054	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0055	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0056	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0057	3366	1	0	0	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0058	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0059	3366	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0060	3366	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	c0061	3366	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL2_chr11_47654591_47720369	0/1	c0001	2709	207	49	31	98	6	22	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	1/0	c0002	2709	119	22	23	46	8	19	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0003	2709	7	1	4	0	1	1	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0004	2709	3	3	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0005	2709	3	0	0	2	1	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0006	2709	3	0	0	3	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0007	2709	2	2	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0008	2709	2	2	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0009	2709	2	0	1	1	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0010	2709	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369