JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMO3_chr1_171085905_171122819	0/0	c0008	1599	7	7	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0009	1599	5	5	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0010	1599	4	0	0	4	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0011	1599	4	0	0	4	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0012	1599	3	2	1	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0013	1599	2	2	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0014	1599	2	0	0	2	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0015	1599	1	1	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0016	1599	1	1	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0017	1599	1	0	0	0	0	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0018	1599	1	0	0	0	0	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0019	1599	1	1	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0020	1599	1	0	0	0	0	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0021	1599	1	0	0	1	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	c0022	1599	1	0	0	0	1	0	copy fasta	FMO3	chr1	171085905	171122819
FMO4_chr1_171309183_171347084	1/1	c0001	1677	334	65	63	153	11	40	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0002	1677	26	24	2	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0003	1677	10	0	0	10	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0004	1677	4	0	0	3	0	1	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0005	1677	2	1	0	0	1	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0006	1677	1	0	0	0	0	1	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0007	1677	1	0	1	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0008	1677	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0009	1677	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0010	1677	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0011	1677	1	1	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0012	1677	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0013	1677	1	1	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0014	1677	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	c0015	1677	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO5_chr1_147181261_147230339	0/0	c0001	1602	369	67	70	187	15	30	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	c0002	1602	32	16	4	1	3	8	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	c0003	1529	2	2	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	c0004	1602	1	1	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	c0005	1602	1	1	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	c0006	1602	1	1	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMOD_chr1_203335628_203356122	0/1	c0001	1131	281	25	63	144	15	33	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	1/0	c0002	1131	167	65	13	72	1	15	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0003	1131	6	0	0	6	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0004	1131	4	0	0	4	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0005	1131	3	0	0	3	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0006	1131	2	0	0	2	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0007	1131	2	2	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0008	1131	2	2	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0009	1131	2	2	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0010	1131	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0011	1131	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0012	1131	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0013	1131	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0014	1131	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122