JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FMOD_chr1_203335628_203356122	0/0	c0015	1131	1	1	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	c0016	1131	1	1	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMR1NB_chrX_147976337_148031665	0/1	c0001	768	142	26	21	81	3	10	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	1/0	c0002	768	130	50	27	26	10	16	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	0/0	c0003	768	1	1	0	0	0	0	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	0/0	c0004	767	1	0	1	0	0	0	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	0/0	c0005	771	1	0	0	1	0	0	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1_chrX_147906919_147956125	1/1	c0001	1899	273	60	48	125	13	25	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	c0002	1899	19	10	3	0	0	6	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	c0003	1899	7	7	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	c0004	1901	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	c0005	1898	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	c0006	1899	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	c0007	1899	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	c0008	1900	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FN1_chr2_215355865_215441068	0/0	c0001	7434	39	2	15	14	2	6	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/1	c0002	7434	28	15	7	0	2	3	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0003	7434	19	0	6	5	1	7	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0004	7434	13	2	6	0	0	5	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0005	7434	12	7	3	1	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0006	7434	12	8	3	0	1	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0007	7434	9	9	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0008	7434	8	0	4	2	1	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0009	7434	6	6	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0010	7434	5	0	2	3	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0011	7434	5	0	3	0	1	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0012	7434	5	1	1	0	2	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0013	7434	4	1	2	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0014	7434	4	3	1	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0015	7434	4	4	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0016	7434	3	0	3	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0017	7434	3	2	1	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0018	7434	3	0	2	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0019	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0020	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0021	7434	2	0	1	0	1	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0022	7434	2	0	1	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0023	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0024	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0025	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0026	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0027	7434	2	0	1	0	1	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0028	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0029	7434	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0030	7434	1	0	0	0	1	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0031	7434	1	0	1	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0032	7434	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0033	7434	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0034	7434	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	1/0	c0035	7434	1	0	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068