JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FN1_chr2_215355865_215441068	0/0	c0036	7434	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0037	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0038	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0039	7434	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0040	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0041	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0042	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0043	7434	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0044	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0045	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0046	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0047	7434	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0048	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0049	7434	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0050	7434	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0051	7434	1	0	0	0	1	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0052	7434	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0053	7434	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0054	7434	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0055	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0056	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0057	7434	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0058	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0059	7434	1	0	1	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0060	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0061	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0062	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0063	7434	1	0	1	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0064	7434	1	0	1	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	c0065	7434	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN3KRP_chr17_82711706_82733013	0/1	c0001	930	369	78	60	169	17	44	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0002	930	11	0	11	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0003	930	9	0	9	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0004	930	9	7	2	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0005	930	9	9	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0006	930	5	0	0	5	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0007	930	4	0	0	4	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	1/0	c0008	930	2	1	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0009	930	2	2	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0010	930	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0011	930	1	1	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0012	930	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0013	930	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0014	930	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	c0015	930	1	0	0	0	1	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3K_chr17_82730615_82756196	0/1	c0001	930	259	61	54	105	10	28	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	c0002	930	133	25	22	63	6	17	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	1/0	c0003	930	2	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	c0004	930	2	2	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	c0005	930	2	2	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196