JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FN3K_chr17_82730615_82756196	0/0	c0006	930	2	2	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	c0007	930	1	0	0	0	0	1	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	c0008	930	1	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FNBP1L_chr1_93443118_93559661	1/1	c0001	1818	300	61	65	127	12	33	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0002	1818	14	14	0	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0003	1818	3	3	0	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0004	1818	2	0	0	2	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0005	1818	1	1	0	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0006	1818	1	0	0	0	0	1	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0007	1818	1	1	0	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0008	1818	1	0	0	1	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	c0009	1818	1	0	1	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1_chr9_129882187_130048189	0/1	c0001	1854	107	36	19	26	5	20	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0002	1854	56	14	20	11	4	7	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0003	1854	26	1	3	15	2	5	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0004	1854	9	3	2	4	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0005	1854	6	6	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0006	1854	2	2	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0007	1854	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0008	1854	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0009	1854	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0010	1854	1	0	0	0	1	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	c0011	1854	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	1/0	c0012	1854	1	0	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP4_chr11_47711494_47772341	1/1	c0001	3054	205	56	33	87	6	21	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0002	3048	82	8	19	33	4	18	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0003	3054	14	13	1	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0004	3048	12	0	8	0	2	2	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0005	3048	8	0	0	8	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0006	3054	7	0	0	6	0	1	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0007	3048	3	0	1	2	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0008	3054	2	2	0	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0009	3054	2	2	0	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0010	3048	2	0	0	0	2	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0011	3054	2	2	0	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0012	3054	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0013	3054	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0014	3054	1	0	1	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0015	3054	1	1	0	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0016	3054	1	0	1	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0017	3054	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0018	3054	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0019	3054	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0020	3048	1	0	0	0	0	1	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0021	3048	1	0	0	0	0	1	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	c0022	3048	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNDC10_chr1_1593012_1605135	1/1	c0001	681	397	92	76	171	14	42	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	c0002	681	3	3	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	c0003	681	2	1	1	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	c0004	681	1	0	0	1	0	0	copy fasta	FNDC10	chr1	1593012	1605135