JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FNDC10_chr1_1593012_1605135	0/0	c0005	681	1	1	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	c0006	681	1	0	1	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	c0007	681	1	1	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC11_chr20_63549159_63561695	0/0	c0001	957	289	43	43	158	9	36	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	1/1	c0002	957	93	31	35	9	8	8	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0003	957	15	15	0	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0004	957	5	2	2	0	1	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0005	957	3	3	0	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0006	957	2	1	1	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0007	957	1	0	0	0	0	1	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0008	957	1	0	0	1	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0009	957	1	1	0	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0010	957	1	0	0	1	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0011	957	1	0	0	1	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0012	957	1	0	1	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0013	957	1	0	1	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0014	957	1	0	1	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	c0015	957	1	0	0	0	0	1	copy fasta	FNDC11	chr20	63549159	63561695
FNDC1_chr6_159164400_159277108	0/0	c0001	5667	35	5	6	19	0	5	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/1	c0002	5685	34	12	0	20	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0003	5667	29	3	2	17	2	5	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0004	5667	23	5	7	8	1	2	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0005	5667	21	4	7	8	0	2	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0006	5667	18	4	3	1	6	4	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0007	5685	16	3	2	11	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0008	5667	15	0	7	4	1	3	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0009	5685	7	0	6	0	1	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0010	5667	7	2	0	1	0	4	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0011	5685	5	2	0	0	0	3	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0012	5667	4	4	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0013	5667	4	3	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0014	5685	4	0	4	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0015	5685	3	3	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0016	5667	3	3	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0017	5667	3	3	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0018	5667	3	1	1	0	1	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0019	5667	3	0	0	3	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0020	5667	3	3	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0021	5667	2	2	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0022	5667	2	0	0	2	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0023	5685	2	2	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0024	5685	2	0	0	1	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0025	5685	2	0	0	2	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0026	5685	2	0	0	0	0	2	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0027	5667	2	0	2	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0028	5685	2	0	0	2	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0029	5685	2	0	2	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0030	5667	2	2	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0031	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0032	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108