JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FNDC1_chr6_159164400_159277108	0/0	c0033	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0034	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0035	5685	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0036	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0037	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0038	5667	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0039	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0040	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0041	5685	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0042	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0043	5667	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0044	5667	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0045	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0046	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0047	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0048	5685	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0049	5685	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0050	5685	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0051	5667	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0052	5685	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0053	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0054	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0055	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0056	5667	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0057	5667	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0058	5667	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0059	5667	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0060	5667	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0061	5667	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0062	5667	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0063	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0064	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0065	5667	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	1/0	c0066	5685	1	0	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0067	5667	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0068	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0069	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0070	5685	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0071	5685	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0072	5685	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0073	5685	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0074	5667	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0075	5667	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	c0076	5685	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC3A_chr13_48970912_49214779	1/1	c0001	3597	256	61	44	117	6	26	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0002	3597	18	5	1	8	0	4	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0003	3597	6	6	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0004	3597	5	0	0	0	4	1	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0005	3597	2	1	1	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0006	3597	1	0	0	1	0	0	copy fasta	FNDC3A	chr13	48970912	49214779