JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FNDC3A_chr13_48970912_49214779	0/0	c0007	3597	1	1	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0008	3597	1	1	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0009	3597	1	0	0	0	0	1	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	c0010	3597	1	1	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3B_chr3_172034578_172406669	0/1	c0001	3615	71	29	7	20	6	8	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0002	3615	42	14	8	12	3	5	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0003	3615	24	2	5	11	3	3	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	1/0	c0004	3615	24	2	4	11	2	4	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0005	3615	8	8	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0006	3615	5	3	1	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0007	3615	3	1	2	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0008	3615	3	3	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0009	3615	2	1	1	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0010	3615	2	0	0	2	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0011	3615	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0012	3615	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0013	3615	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0014	3615	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0015	3615	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0016	3615	1	0	0	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0017	3615	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0018	3615	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	c0019	3615	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC4_chr2_27486883_27500200	1/1	c0001	705	297	78	65	102	16	34	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	c0002	705	8	0	0	8	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	c0003	705	7	6	1	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC5_chr1_32857268_32875912	1/1	c0001	639	412	98	72	178	16	46	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	c0002	639	1	0	0	1	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	c0003	639	1	0	0	1	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC7_chr1_108707908_108747749	0/0	c0001	2202	68	2	21	36	0	9	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/1	c0002	2202	42	1	11	16	6	7	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0003	2202	35	5	12	7	2	9	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	1/0	c0004	2202	34	14	2	15	2	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0005	2202	33	9	5	14	0	5	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0006	2202	27	0	1	26	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0007	2202	19	3	6	0	4	6	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0008	2202	10	10	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0009	2202	8	7	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0010	2202	8	8	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0011	2202	7	0	0	7	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0012	2202	7	0	1	1	0	5	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0013	2202	5	2	1	0	2	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0014	2202	4	0	0	4	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0015	2202	4	4	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0016	2202	4	3	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0017	2202	3	0	0	3	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0018	2202	3	3	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0019	2202	3	3	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0020	2202	3	3	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0021	2202	2	0	0	2	0	0	copy fasta	FNDC7	chr1	108707908	108747749