JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FNDC7_chr1_108707908_108747749	0/0	c0022	2202	2	0	0	2	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0023	2202	2	0	1	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0024	2202	2	0	2	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0025	2202	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0026	2202	2	1	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0027	2202	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0028	2202	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0029	2202	2	0	2	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0030	2202	2	0	0	2	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0031	2202	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0032	2202	2	0	0	2	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0033	2202	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0034	2202	1	0	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0035	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0036	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0037	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0038	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0039	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0040	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0041	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0042	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0043	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0044	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0045	2202	1	0	0	0	0	1	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0046	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0047	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0048	2202	1	0	0	0	0	1	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0049	2202	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0050	2202	1	0	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0051	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0052	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0053	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0054	2202	1	0	0	0	0	1	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0055	2202	1	0	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	c0056	2202	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC8_chr17_35116615_35135732	0/0	c0001	975	183	11	37	105	6	24	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	c0002	975	168	69	21	60	4	14	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	1/1	c0003	975	55	11	15	17	2	8	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	c0004	975	5	5	0	0	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	c0005	975	1	0	1	0	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	c0006	975	1	0	0	1	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	c0007	975	1	0	0	1	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	c0008	975	1	1	0	0	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	c0009	975	1	1	0	0	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC9_chr5_157336598_157350677	1/1	c0001	675	163	7	46	73	8	27	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0002	675	118	35	11	58	5	9	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0003	675	78	48	15	3	4	8	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0004	675	6	0	2	4	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0005	675	4	4	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0006	675	2	0	1	0	1	0	copy fasta	FNDC9	chr5	157336598	157350677