JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FNDC9_chr5_157336598_157350677	0/0	c0007	675	2	2	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0008	675	1	0	1	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0009	675	1	1	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0010	675	1	0	0	1	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0011	675	1	1	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	c0012	675	1	0	0	1	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNIP1_chr5_131636714_131802017	0/1	c0001	3501	236	58	53	109	3	12	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0002	3501	50	6	8	27	1	8	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0003	3501	10	10	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0004	3501	6	0	0	5	0	1	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0005	3501	6	6	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0006	3501	3	0	3	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0007	3501	3	3	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0008	3501	2	0	0	2	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0009	3501	2	2	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0010	3501	2	0	0	0	0	2	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	1/0	c0011	3501	1	0	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0012	3501	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0013	3501	1	0	0	0	0	1	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0014	3501	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0015	3501	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0016	3501	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0017	3501	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	c0018	3501	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP2_chr4_158764026_158913050	1/1	c0001	3345	165	41	40	55	7	20	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0002	3345	36	8	3	20	1	4	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0003	3345	16	12	0	3	0	1	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0004	3345	10	10	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0005	3345	5	0	0	0	0	5	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0006	3345	5	0	4	0	1	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0007	3345	4	4	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0008	3345	2	2	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0009	3345	2	2	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0010	3345	1	0	0	0	0	1	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0011	3345	1	0	1	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0012	3345	1	0	0	0	1	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0013	3345	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0014	3345	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0015	3345	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0016	3345	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0017	3345	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	c0018	3345	1	0	0	0	0	1	copy fasta	FNIP2	chr4	158764026	158913050
FNTA_chr8_43051323_43090785	1/1	c0001	1140	275	71	53	100	16	33	copy fasta	FNTA	chr8	43051323	43090785
FNTA_chr8_43051323_43090785	0/0	c0002	1140	16	15	1	0	0	0	copy fasta	FNTA	chr8	43051323	43090785
FNTA_chr8_43051323_43090785	0/0	c0003	1140	1	1	0	0	0	0	copy fasta	FNTA	chr8	43051323	43090785
FNTA_chr8_43051323_43090785	0/0	c0004	1140	1	1	0	0	0	0	copy fasta	FNTA	chr8	43051323	43090785
FNTA_chr8_43051323_43090785	0/0	c0005	1140	1	0	0	0	0	1	copy fasta	FNTA	chr8	43051323	43090785
FNTB_chr14_64981895_65067650	1/1	c0001	1314	355	86	66	152	10	39	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	c0002	1314	1	1	0	0	0	0	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	c0003	1314	1	1	0	0	0	0	copy fasta	FNTB	chr14	64981895	65067650