JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FNTB_chr14_64981895_65067650	0/0	c0004	1314	1	0	0	1	0	0	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	c0005	1314	1	0	0	0	0	1	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	c0006	1314	1	0	0	1	0	0	copy fasta	FNTB	chr14	64981895	65067650
FOCAD_chr9_20679259_21000950	0/0	c0001	5406	84	20	11	43	3	7	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0002	5406	83	13	13	45	5	7	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/1	c0003	5406	58	14	10	20	2	11	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	1/0	c0004	5406	14	6	4	3	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0005	5406	7	7	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0006	5406	7	5	1	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0007	5406	6	0	0	5	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0008	5406	5	0	0	5	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0009	5406	3	3	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0010	5406	3	0	0	3	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0011	5406	3	0	3	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0012	5406	2	2	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0013	5406	2	0	0	0	2	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0014	5406	2	0	0	0	0	2	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0015	5406	2	2	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0016	5406	2	2	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0017	5406	2	0	1	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0018	5406	2	0	2	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0019	5406	2	0	0	2	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0020	5406	2	2	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0021	5406	1	0	1	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0022	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0023	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0024	5406	1	0	0	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0025	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0026	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0027	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0028	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0029	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0030	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0031	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0032	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0033	5406	1	0	1	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0034	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0035	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0036	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0037	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0038	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0039	5406	1	0	1	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0040	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0041	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0042	5406	1	0	0	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0043	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0044	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0045	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0046	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0047	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950