JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOCAD_chr9_20679259_21000950	0/0	c0048	5406	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	c0049	5406	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOLH1_chr11_49140092_49213602	1/0	c0001	2253	184	27	37	92	11	16	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/1	c0002	2253	99	50	11	33	0	4	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0003	2253	66	0	9	41	5	11	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0004	2253	8	8	0	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0005	2250	6	5	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0006	2253	5	5	0	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0007	2253	2	1	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0008	2253	1	0	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0009	2253	1	0	0	0	0	1	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0010	2253	1	0	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	c0011	2253	1	0	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLR1_chr11_72187140_72201299	1/1	c0001	774	407	94	72	178	16	45	copy fasta	FOLR1	chr11	72187140	72201299
FOLR1_chr11_72187140_72201299	0/0	c0002	774	2	2	0	0	0	0	copy fasta	FOLR1	chr11	72187140	72201299
FOLR1_chr11_72187140_72201299	0/0	c0003	774	1	0	0	1	0	0	copy fasta	FOLR1	chr11	72187140	72201299
FOLR1_chr11_72187140_72201299	0/0	c0004	774	1	0	0	1	0	0	copy fasta	FOLR1	chr11	72187140	72201299
FOLR1_chr11_72187140_72201299	0/0	c0005	774	1	0	0	0	0	1	copy fasta	FOLR1	chr11	72187140	72201299
FOLR2_chr11_72211794_72226950	1/1	c0001	768	379	91	66	159	14	47	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	c0002	768	2	2	0	0	0	0	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	c0003	768	1	0	0	0	0	1	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	c0004	768	1	0	0	1	0	0	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	c0005	768	1	1	0	0	0	0	copy fasta	FOLR2	chr11	72211794	72226950
FOLR3_chr11_72130725_72144892	0/1	c0001	736	297	59	50	136	13	38	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	1/0	c0002	738	23	3	7	11	1	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0003	736	14	0	2	12	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0004	736	9	1	3	0	1	4	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0005	736	8	8	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0006	738	7	6	1	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0007	738	5	5	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0008	738	3	0	1	1	0	1	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0009	738	3	3	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0010	736	3	3	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0011	738	2	2	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0012	736	2	2	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0013	738	1	1	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0014	736	1	0	0	0	1	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0015	738	1	1	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0016	738	1	1	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0017	738	1	1	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0018	736	1	0	0	1	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0019	736	1	0	0	0	0	1	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	c0020	738	1	0	0	1	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOSB_chr19_45462996_45480179	1/1	c0001	1017	284	38	70	141	8	25	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	c0002	1017	147	49	13	56	6	23	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	c0003	1017	1	1	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	c0004	1017	1	0	1	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	c0005	1017	1	0	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSL1_chr11_65887049_65905388	0/0	c0001	816	182	4	37	120	2	19	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	1/1	c0002	816	143	33	27	45	12	24	copy fasta	FOSL1	chr11	65887049	65905388