JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXA3_chr19_45859326_45878797	1/1	c0001	1053	276	61	73	94	11	35	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0002	1053	135	29	8	88	3	7	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0003	1053	22	0	1	17	2	2	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0004	1053	3	0	0	3	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0005	1053	2	2	0	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0006	1053	2	0	2	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0007	1053	1	1	0	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0008	1053	1	0	0	1	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0009	1053	1	0	0	1	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	c0010	1053	1	1	0	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXB1_chr15_59999311_60012444	1/1	c0001	978	441	100	68	205	18	48	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	c0002	978	2	0	0	2	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	c0003	978	1	0	1	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	c0004	978	1	0	1	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	c0005	978	1	0	0	1	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB2_chr9_77014655_77025953	1/1	c0001	1299	379	85	71	167	14	40	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	c0002	1299	12	4	6	0	0	2	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	c0003	1299	4	0	0	0	0	4	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	c0004	1287	1	0	0	1	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	c0005	1299	1	1	0	0	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	c0006	1299	1	1	0	0	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	c0007	1299	1	0	1	0	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	c0008	1299	1	1	0	0	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXC1_chr6_1604915_1618897	1/0	c0001	1662	160	41	37	53	11	17	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0002	1668	119	9	30	72	1	7	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/1	c0003	1665	71	4	2	53	0	11	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0004	1665	59	31	9	6	3	10	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0005	1662	9	7	2	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0006	1662	3	0	0	3	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0007	1668	2	0	0	2	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0008	1668	1	0	0	0	1	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0009	1662	1	0	0	1	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0010	1662	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0011	1665	1	0	0	0	0	1	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	c0012	1665	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC2_chr16_86561829_86574728	1/1	c0001	1506	433	81	83	207	14	46	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0002	1506	4	4	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0003	1506	4	4	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0004	1506	3	2	1	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0005	1506	3	0	0	3	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0006	1506	2	0	0	0	0	2	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0007	1506	2	0	0	2	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0008	1506	2	2	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0009	1506	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0010	1506	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0011	1506	1	0	0	0	0	1	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0012	1506	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0013	1506	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0014	1506	1	0	0	0	0	1	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	c0015	1506	1	1	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728