JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXD1_chr5_73441266_73453777	1/1	c0001	1398	188	30	20	104	8	24	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0002	1398	104	2	30	51	4	17	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0003	1398	62	55	7	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0004	1398	29	1	0	26	0	2	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0005	1404	7	6	1	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0006	1383	6	0	4	0	1	1	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0007	1398	5	0	0	5	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0008	1398	4	0	3	0	1	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0009	1398	2	0	0	0	0	2	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0010	1398	2	2	0	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0011	1398	2	0	2	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0012	1398	1	0	0	0	0	1	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0013	1398	1	0	1	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	c0014	1398	1	0	0	0	0	1	copy fasta	FOXD1	chr5	73441266	73453777
FOXD2_chr1_47433044_47445691	0/0	c0001	1494	330	75	69	139	12	35	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/1	c0002	1494	60	3	4	40	2	10	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0003	1494	5	5	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0004	1488	4	2	1	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0005	1494	3	0	0	3	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0006	1494	2	0	0	2	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0007	1494	2	2	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0008	1494	2	0	0	0	0	2	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0009	1494	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0010	1494	1	0	1	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0011	1494	1	1	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0012	1494	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0013	1494	1	0	0	0	0	1	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0014	1494	1	0	1	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	1/0	c0015	1488	1	0	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	c0016	1494	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD3_chr1_63317567_63330128	1/1	c0001	1437	335	79	67	144	14	29	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0002	1437	61	1	13	40	4	3	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0003	1437	51	12	1	29	0	9	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0004	1437	2	0	0	2	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0005	1437	2	1	1	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0006	1437	1	0	1	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0007	1437	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0008	1425	1	1	0	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0009	1437	1	1	0	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0010	1437	1	1	0	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0011	1437	1	0	0	0	0	1	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0012	1391	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0013	1437	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	c0014	1437	1	0	1	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD4L1_chr2_113493665_113506150	1/1	c0001	1227	177	47	38	53	10	27	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0002	1229	81	9	22	37	3	10	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0003	1227	18	18	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0004	1227	13	0	3	7	1	2	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0005	1229	12	0	0	11	0	1	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0006	1227	6	5	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150