JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXD4L1_chr2_113493665_113506150	0/0	c0007	1227	3	0	0	0	0	3	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0008	1227	2	2	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0009	1217	2	2	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0010	1229	2	2	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0011	1230	2	0	0	2	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0012	1227	1	1	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0013	1227	1	0	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0014	1227	1	0	0	0	0	1	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0015	1227	1	1	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0016	1227	1	1	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0017	1229	1	0	0	1	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0018	1229	1	0	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	c0019	1254	1	0	0	1	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L3_chr9_68297867_68310084	1/0	c0001	1254	46	9	2	25	4	5	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0002	1254	44	20	10	14	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0003	1254	37	4	8	14	1	10	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0004	1254	25	2	5	15	0	3	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0005	1254	6	1	0	2	0	3	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0006	1254	4	0	2	2	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0007	1254	3	0	2	0	1	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0008	1254	2	2	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0009	1254	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0010	1254	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0011	1254	1	0	0	0	0	1	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0012	1254	1	0	0	1	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0013	1254	1	0	1	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0014	1254	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0015	1254	1	0	0	1	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	c0016	1254	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L4_chr9_65732146_65743396	0/0	c0001	1251	72	14	11	36	5	6	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	1/0	c0002	1251	54	21	5	25	1	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0003	1251	30	6	5	15	1	3	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0004	1251	12	0	1	9	0	2	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0005	1248	7	0	3	4	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0006	1251	6	0	0	6	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0007	1251	4	0	0	4	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0008	1251	3	0	0	3	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0009	1251	3	1	0	2	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0010	1251	2	2	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0011	1251	2	1	0	0	1	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0012	1251	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0013	1251	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0014	1251	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0015	1251	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0016	1251	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0017	1251	1	0	1	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0018	1254	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0019	1251	1	0	0	1	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0020	1254	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0021	1251	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396