JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXD4L4_chr9_65732146_65743396	0/0	c0022	1251	1	0	0	1	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	c0023	1251	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L5_chr9_65277101_65290209	0/0	c0001	1250	43	18	2	14	3	6	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	1/0	c0002	1251	7	5	1	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0003	1251	6	1	2	1	1	1	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0004	1251	4	0	0	4	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0005	1251	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0006	1251	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0007	1253	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0008	1250	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0009	1251	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0010	1250	1	1	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0011	1250	1	1	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0012	1250	1	0	0	0	0	1	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0013	1250	1	0	0	1	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0014	1250	1	1	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	c0015	1250	1	0	1	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L6_chr9_41121435_41133681	0/1	c0001	1254	236	49	47	108	10	21	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0002	1254	52	22	6	16	0	8	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0003	1254	20	0	1	17	0	2	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0004	1254	3	2	1	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0005	1254	2	0	0	0	0	2	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0007	1254	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0008	1254	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0009	1254	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0010	1254	1	0	1	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0011	1254	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0012	1254	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0013	1254	1	0	0	0	0	1	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0014	1254	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0015	1254	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0016	1254	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	c0017	1254	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4_chr9_111231_123417	1/1	c0001	1320	116	11	18	64	6	15	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0002	1320	85	3	14	57	1	10	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0003	1320	61	13	16	24	1	7	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0004	1320	60	1	10	40	2	7	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0005	1320	16	15	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0006	1320	15	0	0	15	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0007	1320	10	2	2	4	0	2	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0008	1320	9	7	0	2	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0009	1320	6	5	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0010	1322	6	3	0	0	0	3	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0011	1320	5	0	4	0	1	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0012	1320	5	0	5	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0013	1320	4	4	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0014	1320	4	0	1	0	1	2	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0015	1320	4	4	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0016	1320	3	0	0	3	0	0	copy fasta	FOXD4	chr9	111231	123417