JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXD4_chr9_111231_123417	0/0	c0017	1320	3	3	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0018	1320	3	3	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0019	1322	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0020	1320	2	1	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0021	1322	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0022	1320	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0023	1322	2	0	0	2	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0024	1320	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0025	1320	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0026	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0027	1320	1	0	0	1	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0028	1321	1	0	0	1	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0029	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0030	1322	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0031	1320	1	0	0	0	0	1	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0032	1320	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0033	1320	1	0	0	0	0	1	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0034	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0035	1320	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0036	1320	1	0	0	0	0	1	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0037	1320	1	0	0	1	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0038	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0039	1320	1	0	0	0	0	1	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0040	1320	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0041	1320	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0042	1320	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0043	1320	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0044	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0045	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0046	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0047	1320	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	c0048	1320	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXE1_chr9_97848226_97861717	0/0	c0001	1116	206	39	38	93	12	24	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0002	1122	31	8	13	2	0	8	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0003	1116	29	14	2	9	1	3	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	1/1	c0004	1122	23	1	10	2	2	6	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0005	1116	12	0	0	12	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0006	1116	4	4	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0007	1116	4	0	4	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0008	1116	3	1	2	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0009	1122	3	3	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0010	1131	3	0	1	0	0	2	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0011	1110	2	0	2	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0012	1122	2	0	2	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0013	1116	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0014	1110	1	0	0	0	0	1	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0015	1116	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0016	1110	1	0	0	0	1	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0017	1116	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	c0018	1116	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717