JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXE3_chr1_47411285_47423052	1/0	c0001	960	293	67	55	136	9	25	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/1	c0002	960	91	15	16	35	3	21	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0003	960	16	0	0	16	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0004	960	6	6	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0005	960	5	4	1	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0006	960	3	3	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0007	960	3	0	0	3	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0008	960	2	0	2	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0009	960	2	0	2	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0010	960	2	2	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0011	960	2	2	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0012	960	1	1	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0013	960	1	0	0	0	1	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0014	960	1	0	0	1	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0015	960	1	0	0	0	1	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	c0016	960	1	0	0	1	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXF1_chr16_86505527_86520422	1/1	c0001	1140	404	74	76	191	16	45	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	c0002	1140	9	7	2	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	c0003	1140	9	9	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	c0004	1140	7	0	0	7	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	c0005	1140	3	3	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	c0006	1140	3	0	0	0	0	3	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	c0007	1140	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF2_chr6_1384576_1400603	0/0	c0001	1338	213	58	25	98	5	27	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/1	c0002	1338	98	9	16	63	2	7	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	1/0	c0003	1335	77	17	34	12	7	6	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0004	1341	28	1	3	23	0	1	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0005	1338	11	0	2	6	0	3	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0006	1335	8	6	1	0	1	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0007	1335	3	3	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0008	1338	2	1	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0009	1338	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0010	1338	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0011	1338	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0012	1335	1	1	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0013	1338	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0014	1338	1	0	0	0	1	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0015	1338	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0016	1327	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0017	1341	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	c0018	1350	1	0	1	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXG1_chr14_28761787_28775277	1/1	c0001	1470	417	85	82	190	14	44	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	c0002	1473	3	3	0	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	c0003	1470	1	1	0	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	c0004	1470	1	1	0	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXH1_chr8_144468412_144480849	1/1	c0001	1098	346	61	67	168	10	38	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0002	1098	14	14	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0003	1098	12	11	1	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0004	1098	4	4	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0005	1098	3	2	1	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849