JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXH1_chr8_144468412_144480849	0/0	c0006	1098	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0007	1098	1	0	0	1	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0008	1098	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0009	1098	1	0	0	1	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0010	1098	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0011	1098	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	c0012	1098	1	0	1	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXI1_chr5_170100897_170114734	0/1	c0001	1137	214	25	52	98	15	23	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0002	1137	164	51	16	84	0	13	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	1/0	c0003	1137	23	7	7	5	0	3	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0004	1137	4	4	0	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0005	1137	2	2	0	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0006	1137	1	0	0	0	0	1	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0007	1137	1	0	0	0	1	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0008	1137	1	0	1	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0009	1137	1	0	0	1	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	c0010	1137	1	1	0	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI2_chr10_127732185_127746183	1/1	c0001	957	412	97	77	180	12	44	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	c0002	960	12	0	4	6	0	2	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	c0003	957	3	3	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	c0004	957	3	0	0	3	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	c0005	957	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	c0006	957	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	c0007	957	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	c0008	957	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI3_chr2_88441787_88457693	1/1	c0001	1263	408	99	73	173	15	46	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	c0002	1263	1	0	0	1	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	c0003	1263	1	0	0	0	1	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	c0004	1263	1	0	0	0	0	1	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	c0005	1263	1	1	0	0	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	c0006	1263	1	0	0	0	0	1	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	c0007	1263	1	0	1	0	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXJ1_chr17_76131333_76146245	1/1	c0001	1266	322	82	58	131	8	41	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0002	1266	43	5	10	17	6	5	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0003	1266	5	4	1	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0004	1266	3	0	0	3	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0005	1266	2	2	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0006	1266	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0007	1266	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	c0010	1266	1	0	1	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ2_chr12_8027716_8060517	1/1	c0001	1725	323	84	63	123	11	40	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0002	1725	23	4	0	16	0	3	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0003	1725	18	1	11	0	5	1	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0004	1725	2	2	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0005	1725	2	0	0	2	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0006	1725	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0007	1740	1	0	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0008	1751	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517