JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXJ2_chr12_8027716_8060517	0/0	c0009	1725	1	0	0	1	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0010	1725	1	0	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	c0011	1725	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ3_chr1_42171548_42340235	0/1	c0001	1869	235	50	46	108	3	27	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	1/0	c0002	1869	77	16	10	35	4	11	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0003	1869	6	3	1	0	1	1	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0004	1869	4	4	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0005	1869	3	3	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0006	1869	2	2	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0007	1869	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0008	1869	1	0	0	0	0	1	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0009	1869	1	0	0	1	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0010	1869	1	0	1	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	c0011	1869	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXK1_chr7_4677295_4776442	0/1	c0001	2202	103	7	15	61	3	16	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0002	2202	61	20	14	13	4	10	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0003	2202	50	41	4	2	0	3	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0004	2202	28	7	3	10	0	8	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0005	2202	7	1	5	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0006	2202	5	3	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0007	2202	5	5	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0008	2202	4	0	0	4	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0009	2202	3	0	0	3	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	1/0	c0010	2202	3	0	1	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0011	2202	3	1	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0012	2202	2	1	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0013	2202	2	1	0	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0014	2202	2	0	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0015	2202	2	2	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0016	2202	2	2	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0017	2202	2	0	1	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0018	2202	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0019	2202	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0020	2202	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0021	2202	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0022	2202	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0023	2202	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0024	2202	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0025	2202	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0026	2202	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	c0027	2202	1	0	0	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK2_chr17_82514732_82609602	1/1	c0001	1983	237	66	55	70	10	34	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0002	1968	24	6	9	3	2	4	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0003	1983	12	2	0	5	0	5	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0004	1983	5	1	4	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0005	1983	3	2	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0006	1983	2	0	2	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0007	1983	1	0	0	0	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0008	1983	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0009	2031	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602