JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXK2_chr17_82514732_82609602	0/0	c0010	2031	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0011	4076	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0012	5066	1	0	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0013	2731	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0014	3002	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0015	1983	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0016	1983	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0017	1983	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0018	1983	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0019	1983	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0020	1983	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0021	1983	1	0	0	0	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0022	2081	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0023	2471	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0024	5296	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0025	1983	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0026	1983	1	0	0	0	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0027	1983	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0028	1983	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0029	5623	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0030	1968	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	c0031	1983	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXL1_chr16_86573549_86588478	0/0	c0001	1038	436	81	81	213	16	45	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0002	1038	8	8	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0003	1038	4	0	0	4	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0004	1038	2	0	0	0	0	2	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0005	1038	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0006	1038	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0007	1038	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0008	1038	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0009	1038	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0010	1038	1	0	1	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0011	1023	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0012	1038	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0013	1038	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0014	1038	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0015	1038	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	c0016	1038	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL2NB_chr3_138942217_138958990	1/0	c0001	528	261	37	44	141	11	27	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/1	c0002	528	103	33	21	35	0	13	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0003	528	16	16	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0004	518	6	0	5	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0005	528	3	3	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0006	528	2	0	2	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0007	528	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0008	528	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0009	528	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0010	528	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	c0011	528	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2_chr3_138939224_138952137	1/0	c0001	1131	303	43	67	149	11	32	copy fasta	FOXL2	chr3	138939224	138952137