JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXL2_chr3_138939224_138952137	0/1	c0002	1131	83	44	7	23	0	8	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	c0003	1131	5	5	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	c0004	1131	3	0	2	0	1	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	c0005	1131	2	2	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	c0006	1131	1	1	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	c0007	1131	1	1	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL3_chr7_285170_296488	1/1	c0001	702	198	32	34	103	7	20	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0002	702	91	7	33	28	9	14	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0003	702	63	40	6	13	1	3	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0004	702	22	2	4	13	1	2	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0005	702	11	1	2	3	0	5	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0006	702	7	6	1	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0007	702	4	3	1	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0008	702	2	2	0	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0009	702	1	0	0	0	0	1	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0010	702	1	0	1	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0011	702	1	1	0	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0012	702	1	0	0	1	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0013	702	1	0	0	1	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	c0014	702	1	0	0	0	0	1	copy fasta	FOXL3	chr7	285170	296488
FOXM1_chr12_2852680_2882174	0/0	c0001	2292	209	32	43	101	7	26	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/1	c0002	2292	74	1	10	47	3	12	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0003	2292	72	13	11	44	0	4	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0004	2292	16	15	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0005	2292	10	2	5	0	0	3	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0006	2292	8	7	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0007	2292	8	7	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0008	2292	4	0	4	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0009	2292	4	4	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0010	2292	4	0	1	2	1	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0011	2292	4	0	0	4	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0012	2292	3	2	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0013	2292	2	2	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0014	2292	2	1	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0015	2292	2	0	1	1	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	1/0	c0016	2292	2	0	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0017	2292	2	2	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0018	2292	2	2	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0019	2292	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0020	2292	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0021	2292	1	0	0	0	1	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0022	2292	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0023	2292	1	0	0	1	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0024	2292	1	0	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0025	2292	1	0	0	1	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0026	2292	1	0	0	1	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0027	2292	1	0	0	0	0	1	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	c0028	2292	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXN1_chr17_28501348_28543900	1/1	c0001	1947	165	25	29	75	8	26	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0002	1947	101	49	20	17	2	13	copy fasta	FOXN1	chr17	28501348	28543900