JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXN1_chr17_28501348_28543900	0/0	c0003	1947	35	0	6	24	3	2	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0004	1947	19	0	9	9	1	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0005	1947	6	6	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0006	1947	5	4	0	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0007	1947	5	1	0	4	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0008	1947	5	0	1	4	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0009	1947	3	0	3	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0010	1947	2	2	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0011	1947	2	1	1	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0012	1947	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0013	1947	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0014	1947	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0015	1947	1	0	0	0	0	1	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0016	1947	1	0	1	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0017	1947	1	0	0	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0018	1947	1	0	0	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	c0019	1947	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN2_chr2_48309682_48384295	1/1	c0001	1296	215	57	39	74	8	35	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	c0002	1296	106	11	17	67	5	6	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	c0003	1296	12	11	1	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	c0004	1296	8	1	3	0	1	3	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	c0005	1296	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	c0006	1296	1	0	0	1	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	c0007	1296	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN3_chr14_89151177_89422233	1/1	c0001	1407	220	65	40	80	6	27	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	c0002	1407	5	5	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	c0003	1407	4	0	0	3	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	c0004	1407	1	0	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN4_chr12_109272978_109314284	1/0	c0001	1554	215	66	31	82	6	29	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0002	1554	92	9	23	52	5	3	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0003	1554	18	4	8	0	3	3	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0004	1554	17	7	2	4	1	3	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0005	1554	7	3	1	3	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/1	c0006	1554	4	1	1	0	0	1	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0007	1554	3	0	0	0	0	3	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0008	1554	3	0	1	0	2	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0009	1554	2	0	0	2	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0010	1554	1	0	0	0	1	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0011	1554	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0012	1554	1	0	0	1	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0013	1554	1	0	0	1	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0014	1554	1	0	1	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0015	1554	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	c0016	1554	1	0	0	1	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXO1_chr13_40550667_40671641	1/1	c0001	1968	325	80	61	139	16	27	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0002	1968	45	0	4	37	0	4	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0003	1968	7	0	0	7	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0004	1968	5	0	0	3	0	2	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0005	1968	2	2	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0006	1968	2	2	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641