JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXO1_chr13_40550667_40671641	0/0	c0007	1968	1	0	1	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0008	1968	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0009	1968	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0010	1968	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0011	1968	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0012	1968	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0013	1968	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	c0014	1968	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO3B_chr17_18662629_18687314	1/0	c0001	873	208	29	33	114	9	22	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/1	c0002	873	118	22	31	47	5	12	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0003	873	40	1	1	37	0	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0004	873	24	6	6	7	0	5	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0005	873	19	8	6	0	1	4	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0006	867	18	17	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0007	873	11	2	1	4	1	3	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0008	867	6	6	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0009	876	4	4	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0010	867	3	3	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0011	873	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0012	873	1	0	0	0	0	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0013	873	1	0	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0014	873	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	c0015	876	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3_chr6_108555917_108689774	1/0	c0001	2022	214	70	25	81	13	24	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/1	c0002	2022	54	17	15	11	3	7	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	c0003	2022	3	0	0	2	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	c0004	2022	3	0	2	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	c0005	2022	1	1	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	c0006	2022	1	0	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	c0007	2022	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	c0008	2022	1	0	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO4_chrX_71090851_71108532	1/1	c0001	1518	290	76	58	118	7	29	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	c0002	1518	1	1	0	0	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	c0003	1518	1	0	0	0	0	1	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	c0004	1518	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	c0005	1518	1	1	0	0	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	c0006	1520	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXP1_chr3_70949708_71588728	1/1	c0001	2034	96	68	14	2	2	8	copy fasta	FOXP1	chr3	70949708	71588728
FOXP2_chr7_114409815_114698765	1/1	c0001	2148	165	55	33	42	8	25	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	c0002	2148	5	5	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	c0003	2148	2	2	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	c0004	2148	1	0	0	0	0	1	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	c0005	2148	1	0	1	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP3_chrX_49245438_49269710	1/1	c0001	1296	282	68	52	122	9	29	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0002	1296	4	0	0	4	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0003	1296	3	3	0	0	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0004	1296	2	0	0	0	1	1	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0005	1296	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0006	1295	1	0	0	0	0	1	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0007	1296	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710