JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXP3_chrX_49245438_49269710	0/0	c0008	1283	1	0	0	0	0	1	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0009	1297	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0010	1296	1	1	0	0	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0011	1298	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	c0012	1295	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP4_chr6_41541381_41607384	1/0	c0001	2043	178	31	41	75	9	21	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0002	2043	134	39	23	53	7	12	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0003	2043	15	0	5	0	2	8	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0004	2043	5	5	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/1	c0005	2043	4	0	2	0	0	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0006	2043	3	3	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0007	2043	3	0	3	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0008	2043	2	2	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0009	2043	2	0	0	2	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0010	2043	2	2	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0011	2043	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0012	2043	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0013	2043	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0014	2043	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0015	2043	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0016	2043	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0017	2043	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	c0018	2043	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXQ1_chr6_1307098_1319758	0/0	c0001	1212	108	18	16	57	4	13	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0002	1212	85	10	13	58	1	3	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0003	1212	49	2	8	31	4	4	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/1	c0004	1212	47	9	29	2	4	2	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0005	1212	37	19	5	2	4	7	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0006	1212	19	13	0	5	0	1	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0007	1212	10	0	1	7	0	2	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0008	1212	9	8	1	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0009	1212	8	0	2	1	1	4	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	1/0	c0010	1212	8	5	1	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0011	1212	7	1	0	6	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0012	1212	2	2	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0013	1212	2	0	0	2	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0014	1212	2	0	0	0	0	2	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0015	1212	1	0	0	0	0	1	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0016	1212	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0017	1212	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0018	1212	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0019	1212	1	0	0	0	0	1	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0020	1212	1	0	1	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0021	1212	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0022	1212	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0023	1212	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0024	1212	1	0	1	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0025	1212	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0026	1212	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	c0027	1212	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758