JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXR1_chr11_118966761_118986287	1/1	c0001	879	407	83	76	192	14	40	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	c0002	879	7	7	0	0	0	0	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	c0003	879	5	3	0	0	0	2	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	c0004	879	4	0	0	0	0	4	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	c0005	879	4	1	0	1	0	2	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	c0006	879	2	0	0	2	0	0	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	c0007	879	1	0	0	1	0	0	copy fasta	FOXR1	chr11	118966761	118986287
FOXR2_chrX_55618400_55631192	0/0	c0001	936	260	31	45	148	7	29	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	1/1	c0002	936	54	41	6	0	0	5	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	c0003	936	9	0	7	1	1	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	c0004	936	1	0	0	1	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	c0005	936	1	0	0	1	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXRED1_chr11_126264154_126283126	1/1	c0001	1461	376	86	70	160	12	46	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0002	1461	3	3	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0003	1461	3	3	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0004	1461	2	0	0	2	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0005	1461	2	0	0	0	2	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0006	1394	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0007	1461	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0008	1461	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	c0009	1461	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED2_chr22_36482190_36512040	0/0	c0001	2055	126	35	27	41	8	15	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	1/1	c0002	2055	91	9	9	57	0	14	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0003	2055	36	20	8	1	3	4	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0004	2055	12	0	5	7	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0005	2055	12	10	1	0	1	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0006	2055	6	6	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0007	2056	5	2	1	2	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0008	2055	5	0	0	5	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0009	2056	4	0	0	2	0	2	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0010	2055	3	0	3	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0011	2055	3	3	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0012	2056	2	0	2	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0013	2055	2	2	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0014	2055	2	2	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0015	2055	2	0	0	2	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0016	2055	1	0	1	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0017	2055	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0018	2055	1	0	0	0	0	1	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0019	2055	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0020	2055	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0021	2055	1	0	1	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0022	2055	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0023	2055	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	c0024	2055	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXS1_chr20_31839303_31850604	1/1	c0001	993	359	86	72	139	16	44	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	c0002	993	6	6	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	c0003	993	5	0	3	0	2	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	c0004	993	3	3	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	c0005	993	2	0	0	1	0	1	copy fasta	FOXS1	chr20	31839303	31850604