JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOXS1_chr20_31839303_31850604	0/0	c0006	993	2	2	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	c0007	993	1	1	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	c0008	993	1	0	0	0	0	1	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	c0009	993	1	0	1	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FPGS_chr9_127797882_127819081	0/1	c0001	1764	306	57	50	170	5	23	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	1/0	c0002	1764	58	13	16	6	7	15	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0003	1764	26	22	0	1	0	3	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0004	1764	2	0	2	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0005	1764	2	0	0	0	0	2	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0006	1764	2	0	2	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0007	1764	2	0	0	2	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0008	1764	2	0	0	2	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0009	1764	1	0	1	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0010	1795	1	0	1	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0011	1764	1	0	0	0	0	1	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0012	1764	1	1	0	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0013	1764	1	1	0	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	c0014	1764	1	0	0	1	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGT_chr1_74193242_74213702	0/1	c0001	1785	150	18	18	84	5	24	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	1/0	c0002	1785	128	56	17	40	2	12	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0003	1785	86	7	34	31	7	7	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0004	1785	2	2	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0005	1785	2	0	2	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0006	1785	2	0	0	2	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0007	1785	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0008	1785	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0009	1785	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0010	1785	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0011	1785	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0012	1785	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0013	1785	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0014	1785	1	0	1	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0015	1785	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	c0016	1785	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPR1_chr19_51740773_51756878	0/0	c0001	1053	73	8	19	31	2	13	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0002	1053	46	2	21	19	2	2	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0003	1053	44	12	6	20	3	3	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0004	1053	43	12	6	23	0	2	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0005	1053	36	7	3	21	0	5	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0006	1053	30	0	0	30	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0007	1053	22	1	2	18	1	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0008	1053	21	1	5	8	3	4	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0009	1053	20	0	0	18	0	2	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0010	1053	19	1	8	1	1	8	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0011	1053	17	15	2	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0012	1053	11	1	4	0	3	3	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0013	1053	10	0	0	10	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0014	1053	9	0	3	2	1	3	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0015	1053	8	0	0	8	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0016	1053	7	7	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878