JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FPR1_chr19_51740773_51756878	0/0	c0017	1053	6	4	0	2	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	1/0	c0018	1053	6	1	4	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0019	1053	5	0	0	5	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0020	1053	4	4	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0021	1053	4	4	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0022	1053	4	4	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/1	c0023	1053	4	1	0	2	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0024	1053	3	2	1	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0025	1053	3	0	0	3	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0026	1053	3	0	0	3	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0027	1053	2	0	0	0	0	2	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0028	1053	2	0	0	2	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0029	1053	2	0	0	2	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0030	1053	2	2	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0031	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0032	1053	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0033	1053	1	0	1	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0034	1053	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0035	1053	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0036	1053	1	0	1	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0037	1053	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0038	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0039	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0040	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0041	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0042	1053	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0043	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0044	1053	1	0	0	0	0	1	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0045	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0046	1053	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0047	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0048	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0049	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	c0050	1053	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR2_chr19_51756180_51775531	1/1	c0001	1056	467	95	82	220	18	50	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	c0002	1056	3	3	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	c0003	1056	1	1	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	c0004	1056	1	1	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR3_chr19_51790157_51831190	1/1	c0001	1062	306	88	52	123	13	28	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	c0002	1062	106	8	26	55	3	14	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	c0003	1062	2	0	0	2	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	c0004	1062	2	2	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FRA10AC1_chr10_93662883_93707592	1/0	c0001	948	146	46	23	60	2	14	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/1	c0002	948	105	3	26	55	7	13	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	c0003	948	84	23	8	48	2	3	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	c0004	948	22	7	7	3	3	2	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	c0005	948	3	3	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	c0006	948	2	0	0	2	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	c0007	948	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	c0008	948	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592