JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FRAS1_chr4_78052323_78549269	0/0	c0051	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0052	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0053	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0054	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0055	12039	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0056	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0057	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0058	12039	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0059	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0060	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0061	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0062	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0063	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0064	12039	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0065	12039	1	0	0	0	1	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0066	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0067	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0068	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0069	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0070	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0071	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0072	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0073	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0074	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0075	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0076	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0077	12039	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0078	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0079	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0080	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0081	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0082	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0083	12039	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0084	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0085	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0086	12039	1	0	0	0	1	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0087	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0088	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0089	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0090	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0091	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0092	12039	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0093	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0094	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0095	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0096	12039	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0097	12039	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0098	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0099	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	c0100	12039	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269